Package: sparsesurv 0.1.1

Alexandros Angelakis

sparsesurv: Forecasting and Early Outbreak Detection for Sparse Count Data

Functions for fitting, forecasting, and early detection of outbreaks in sparse surveillance count time series. Supports negative binomial (NB), self-exciting NB, generalise autoregressive moving average (GARMA) NB , zero-inflated NB (ZINB), self-exciting ZINB, generalise autoregressive moving average ZINB, and hurdle formulations. Climatic and environmental covariates can be included in the regression component and/or the zero-modified components. Includes outbreak-detection algorithms for NB, ZINB, and hurdle models, with utilities for prediction and diagnostics.

Authors:Alexandros Angelakis [aut, cre], Bryan Nyawanda [aut], Penelope Vounatsou [aut]

sparsesurv_0.1.1.tar.gz
sparsesurv_0.1.1.zip(r-4.7)sparsesurv_0.1.1.zip(r-4.6)sparsesurv_0.1.1.zip(r-4.5)
sparsesurv_0.1.1.tgz(r-4.6-any)sparsesurv_0.1.1.tgz(r-4.5-any)
sparsesurv_0.1.1.tar.gz(r-4.7-any)sparsesurv_0.1.1.tar.gz(r-4.6-any)
sparsesurv_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
sparsesurv/json (API)
NEWS

# Install 'sparsesurv' in R:
install.packages('sparsesurv', repos = c('https://alexangelakis-ang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alexangelakis-ang/sparsesurv/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

jagscpp

3.18 score 495 downloads 9 exports 15 dependencies

Last updated from:3789f5930a. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK157
source / vignettesOK188
linux-release-x86_64OK128
macos-release-arm64OK148
macos-oldrel-arm64OK145
windows-develOK109
windows-releaseOK80
windows-oldrelOK109
wasm-releaseOK107

Exports:GARMA_NBGARMA_ZINBNBoutbreakHNBoutbreakNBoutbreakZINBSENBSEZINBZINB

Dependencies:abindbootclicodagluelatticelifecyclemagrittrR2jagsR2WinBUGSrjagsrlangstringistringrvctrs